{"id":45,"date":"2015-09-06T01:24:23","date_gmt":"2015-09-05T16:24:23","guid":{"rendered":"http:\/\/133.83.153.123\/?page_id=45"},"modified":"2020-05-12T03:36:50","modified_gmt":"2020-05-11T18:36:50","slug":"%e8%ab%96%e6%96%87%e3%83%bb%e7%99%ba%e8%a1%a8","status":"publish","type":"page","link":"https:\/\/ps.agr.ryukoku.ac.jp\/naganolab\/?page_id=45","title":{"rendered":"\u8ad6\u6587\u306a\u3069"},"content":{"rendered":"

Selected Papers<\/a>
\nFull list of publications<\/a>
\n\u66f8\u7c4d\u30fb\u89e3\u8aac\u30fb\u7dcf\u8aac<\/a>
\n\u30b7\u30f3\u30dd\u30b8\u30a6\u30e0\u306a\u3069\u306e\u30aa\u30fc\u30ac\u30ca\u30a4\u30b6<\/a><\/p>\n

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Selected papers<\/h3>\n
    \n
  1. Ishikawa A, Kabeya N, Ikeya K, Kakioka R, Cech JN, Osada N, Leal MC, Kume M, Toyoda A, Tezuka A, Nagano AJ<\/strong><\/span>, Yamasaki YY, Suzuki Y, Kokita T, Takahashi H, Lucek K, Marques D, Takehana Y, Naruse K, Mori S, Monroig O, Ladd N, Schubert C, Matthews B, Peichel CL, Seehausen O, Yoshizaki G, Kitano J, (2019) A key metabolic innovation enabled freshwater colonization and radiation by marine fish,\u00a0Science<\/em><\/strong><\/span>, 364(6443):886-889<\/li>\n
  2. Kamitani\u00a0M, Kashima M, Tezuka A, Nagano AJ<\/strong><\/span>, (2019) Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures, Scientific Reports<\/em><\/strong><\/span>, 9:7091<\/li>\n
  3. Nagano AJ<\/strong><\/span>, Kawagoe T, Sugisaka J, Honjo MN, Iwayama K, Kudoh H (2019) Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation, Nature Plants<\/em><\/strong><\/span>, 5:74\u201383<\/li>\n
  4. Iwayama K, Aisaka Y, Kutsuna N, Nagano AJ<\/strong><\/span>\u00a0(2017) FIT: Statistical modeling tool for transcriptome dynamics under fluctuating field conditions.,\u00a0Bioinformatics<\/em><\/strong><\/span>, btx049<\/li>\n
  5. Nagano AJ<\/span><\/strong>,\u00a0Sato Y, Mihara M, Antonio BA, Motoyama R, Itoh H, Nagamura Y and Izawa T, (2012)\u00a0Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions.,\u00a0Cell<\/span><\/em><\/strong>, 51(6):1358-69.<\/li>\n<\/ol>\n

    Full list of publications<\/h3>\n
      \n
    1. Nishio H, Buzas DM,\u00a0Nagano AJ<\/u><\/strong>,\u00a0Iwayama K, Ushio M, *Kudoh H, (2020) Repressive chromatin modification underpins the long-term expression trend of a perennial flowering gene in nature,\u00a0Nature Communications<\/em><\/strong><\/span>,\u00a011 (1), 1-12<\/li>\n
    2. Ueda Y, Ohtsuki N, Kadota K, Tezuka A,\u00a0Nagano AJ<\/u><\/strong>,\u00a0Kadowaki T, Kim Y, Miyao M, *Yanagisawa S, (2020) Gene Regulatory Network and Its Constituent Transcription Factors That Control Nitrogen Deficiency Responses in Rice,\u00a0New Phytologist<\/em><\/strong><\/span>,\u00a0doi: 10.1111\/nph.16627.<\/li>\n
    3. Okuyama Y, Goto N,\u00a0Nagano AJ<\/u><\/strong>,\u00a0Yasugi M, Kokubugata G, Kudoh H, Qi Z, Ito T, Kakishima S, Sugawara T, (2020) Radiation history of Asian Asarum (sect. Heterotropa, Aristolochiaceae) resolved using a phylogenomic approach based on double-digested RAD-seq data,\u00a0Annals of Botany<\/em><\/strong><\/span>,\u00a0doi.org\/10.1093\/aob\/mcaa072<\/li>\n
    4. Sakaguchi S,\u00a0Nagano AJ<\/u><\/strong>,\u00a0Yasugi M, Kudoh H, Ishikawa N, Ito M, (2020) Genetic consequences of being a dwarf: Do evolutionary changes in life-history traits influence gene flow patterns in populations of the world\u2019s smallest goldenrod?,\u00a0Annals of Botany<\/em><\/strong><\/span>,\u00a0doi.org\/10.1093\/aob\/mcaa062<\/li>\n
    5. Yamada K, Goto-Yamada S, Nakazaki A, Kunieda T, Kuwata K, Nagano AJ<\/u><\/strong>, Nishimura M, Hara-Nishimura I, (2020) Endoplasmic reticulum-derived bodies enable a single-cell chemical defense in Brassicaceae plants, Communications Biology<\/em><\/strong><\/span>, 14;3(1):21.<\/li>\n
    6. Tsujimoto M, Araki KS, Honjo MN, Yasugi M, Nagano AJ<\/u><\/strong>, Akama S, Hatakeyama M, Shimizu-Inatsugi R, Sese J, Shimizu KK, Kudoh H, (2020) Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq, AoB PLANTS<\/em><\/strong><\/span>,<\/em><\/strong> 12(1) plz080, https:\/\/doi.org\/10.1093\/aobpla\/plz080<\/li>\n
    7. Hirase S, Tezuka A, Nagano AJ<\/u>, Kikuchi K, Iwasaki W, (2020) Genetic isolation by distance in the yellowfin goby populations revealed by RAD sequencing, Ichthyological Research<\/em><\/strong><\/span>, 67 (1), 98-104<\/li>\n
    8. Hirase S, Kokita T, Nagano AJ<\/u><\/strong>, Kikuchi K, (2020) Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii, Heredity<\/em><\/strong><\/span>, 124 (1), 223-235<\/li>\n
    9. Park C, Dwiyanti MS, Nagano AJ<\/u><\/strong>, Liu B, Yamada T, Abe J, (2019) Identification of quantitative trait loci for increased \u03b1-tocopherol biosynthesis in wild soybean using a high-density genetic map, BMC Plant Biology<\/em><\/strong><\/span>, 19(1):510. doi: 10.1186\/s12870-019-2117-z.<\/li>\n
    10. Tam NT, Dwiyanti MS, Koide Y, Nagano AJ<\/u><\/strong>, Ky H, Tin HQ, Hien NL, Dung LV, Kishima Y, (2019) Profiling SNP and Nucleotide Diversity to Characterize Mekong Delta Rice Landraces in Southeast Asian Populations, The Plant Genome<\/em><\/strong><\/span>, 12(3)<\/li>\n
    11. Sun F, Xu M, Park C, Dwiyanti MS, Nagano AJ<\/u><\/strong>, Zhu J, Watanabe S, Kong F, Liu B, Yamada T, Abe J, (2019) Characterization and quantitative trait locus mapping of late-flowering from a Thai soybean cultivar introduced into a photoperiod-insensitive genetic background, PLoS ONE<\/em><\/strong><\/span>, 14(12):e0226116. doi: 10.1371\/journal.pone.0226116.<\/li>\n
    12. Honjo MN, Emura N, Kawagoe T, Sugisaka J, Kamitani M, Nagano AJ<\/u><\/strong>, Kudoh H, (2019) Seasonality of interactions between a plant virus and its host during persistent infection in a natural environment, ISME Journal<\/em><\/strong><\/span>, in press<\/li>\n
    13. Lee JS, Lee BY, Kim MS, Choi BS, Nagano AJ<\/u><\/strong>, Takehana Y, (2019) Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma, G3: Genes, Genomes, Genetics<\/em><\/strong><\/span>, 9(11):3537-3545<\/li>\n
    14. Yoichi W, Minamitani T, Oh S-H, Nagano AJ<\/u><\/strong>, Abe H, Yukawa T, (2019) New taxa of Rhododendron tschonoskii alliance (Ericaceae) from East Asia, PhytoKeys<\/em><\/strong><\/span>, 134, 97<\/li>\n
    15. Sato Y, Tezuka A, Kashima M, Deguchi A, Shimizu-Inatsugi R, Yamazaki M, Shimizu KK, Nagano AJ<\/u><\/strong>, (2019) Transcriptional variation in glucosinolate biosynthetic genes and inducible responses to aphid herbivory on field-grown Arabidopsis thaliana, Frontiers in Genetics<\/em><\/strong><\/span>, doi: 10.3389\/fgene.2019.00787<\/li>\n
    16. Sutra N, Kusumi J, Montenegro J, Kobayashi H, Fujimoto S, Masengi KWA, Nagano AJ<\/u><\/strong>, Toyoda A, Matsunami M, Kimura R, Yamahira K, (2019) Evidence for sympatric speciation in a Wallacean ancient lake, Evolution<\/em><\/strong><\/span>, doi: 10.1111\/evo.13821.<\/li>\n
    17. Adachi S, Tanaka Y, Miyagi A, Kashima M, Tezuka A, Toya Y, Kobayashi S, Ohkubo S, Shimizu H, Kawai-Yamada M, Sage RF, Nagano AJ<\/u><\/strong>, Yamori W, (2019) High-yielding rice Takanari has superior photosynthetic response to a commercial rice Koshihikari under fluctuating light, Journal of Experimental Botany<\/em><\/strong><\/span>, pii: erz304<\/li>\n
    18. Tanigaki Y, Higashi T, Takayama K, Nagano AJ<\/u><\/strong>, Honjo MN, Tezuka A, Kamitani M, Fukuda H, (2019) Simplification of circadian rhythm measurement using species-independent time-indicated genes,\u00a0Current Plant Biology<\/em><\/strong><\/span>, 100118<\/li>\n
    19. Yamashita H, Katai H, Kawaguchi L, Nagano AJ<\/u><\/strong>, Nakamura Y, Morita A, Ikka T, (2019) Analyses of single nucleotide polymorphisms identified by ddRAD-seq reveal genetic structure of tea germplasm and Japanese landraces for tea breeding, PLoS ONE<\/em><\/strong><\/span>, 14 (8), e0220981<\/li>\n
    20. Ishikawa A, Kabeya N, Ikeya K, Kakioka R, Cech JN, Osada N, Leal MC, Kume M, Toyoda A, Tezuka A, Nagano AJ<\/strong><\/span>, Yamasaki YY, Suzuki Y, Kokita T, Takahashi H, Lucek K, Marques D, Takehana Y, Naruse K, Mori S, Monroig O, Ladd N, Schubert C, Matthews B, Peichel CL, Seehausen O, Yoshizaki G, Kitano J, (2019) A key metabolic innovation enabled freshwater colonization and radiation by marine fish,\u00a0Science<\/em><\/strong><\/span>, 364(6443):886-889<\/li>\n
    21. Tezuka A, Takasu M, Tozaki T, Nagano AJ<\/strong><\/span>, (2019) Genetic diversity and relationships between Taishu horses outside and inside of Tsushima Island,\u00a0Journal of Equine Science<\/em><\/strong><\/span>, 30(2): 33\u201340<\/li>\n
    22. Yamaura Y, Narita A, Kusumoto Y, Nagano AJ<\/strong><\/span>, Tezuka A, Okamoto T, Takahara H, Nakamura F, Isagi Y, Lindenmayer D, (2019) Genomic reconstruction of 100,000-year grassland history in a forested country: population dynamics of specialist forbs,\u00a0Biology Letters<\/em><\/strong><\/span>, 15(5):20180577<\/li>\n
    23. Kamitani\u00a0M, Kashima M, Tezuka A, Nagano AJ<\/strong><\/span>, (2019) Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures, Scientific Reports<\/em><\/strong><\/span>, 9:7091<\/li>\n
    24. Sato Y, Shimizu-Inatsugi R, Yamazaki M, Shimizu KK, Nagano AJ<\/strong><\/span>, (2019) Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana, BMC Plant biology<\/em><\/strong><\/span>, 19:163<\/li>\n
    25. Koide Y, Uchiyama T, Ota Y, Sakaguchi S, Tezuka A, Nagano AJ<\/strong><\/span>, Takamure I, Kishima Y, (2019) Genetic properties responsible for the transgressive segregation of days to heading in rice, G3: Genes, Genomes, Genetics<\/em><\/strong><\/span>, 9(5), 1655-1662<\/li>\n
    26. Ogishima M, Horie S, Kimura T, Yamashiro T, Dohzono I, Kawaguchi L, Nagano AJ<\/strong><\/span>, Maki M, (2019) Frequent chloroplast capture among Isodon (Lamiaceae) species in Japan revealed by phylogenies based on variation in chloroplast and nuclear DNA, Plant Species Biology<\/em><\/strong><\/span>, 34 (3), 127-137<\/li>\n
    27. Fukuda S, Nagano Y, Matsuguma K, Ishimoto K, Hiehata N, Nagano AJ<\/strong><\/span>, Tezuka A, Yamamoto T, (2019) Construction of a high-density linkage map for bronze loquat using RAD-Seq, Scientia Horticulturae<\/em><\/strong><\/span>,\u00a0251, 59-64<\/li>\n
    28. Kubo N, Mimura Y, Matsuda T, Nagano AJ<\/strong><\/span>, Hirai N, Higashimoto S, Yoshida H, Uemura N, Fujii T (2019) Classification of tea (Camellia sinensis) landraces and cultivars in Kyoto, Japan and other regions, based on SSR markers and RAD-seq analysis, Genetic Resources and Crop Evolution<\/em><\/strong><\/span>,\u00a066(2), 441-451<\/li>\n
    29. Nagano AJ<\/strong><\/span>, Kawagoe T, Sugisaka J, Honjo MN, Iwayama K, Kudoh H (2019) Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation, Nature Plants<\/em><\/strong><\/span>, 5:74\u201383<\/li>\n
    30. Koeda S, Sato K, Saito H,\u00a0Nagano AJ<\/strong>,<\/span>\u00a0Yasugi M, Kudoh H, Tanaka Y (2019) Mutation in the putative ketoacyl-ACP reductase CaKR1 induces loss of pungency in Capsicum,\u00a0Theoretical and Applied Genetics<\/em><\/strong><\/span>, 132(1): 65-80.<\/li>\n
    31. Fukuda A, Hirose T, Aoki N, Kondo S, Yonekura M, Kataoka T, Ohto C, Nagano AJ<\/strong><\/span>\u00a0(2018) Selection of Transcripts Affecting Initial Growth Rate of Rice Backcrossed Inbred Lines Using RNA Sequencing Data, Frontiers in Plant Science<\/em><\/strong><\/span>, 9:1880. doi: 10.3389\/fpls.2018.01880<\/li>\n
    32. Tanigaki Y, Higashi T,\u00a0Nagano AJ<\/strong>,<\/span> Honjo MN, Fukuda H (2018) Growth and Environmental Change-Independent Genes Associated with Clock Gene TOC1 in Green Perilla, Environmental Control in Biology<\/em><\/strong><\/span>,\u00a056(4):137-142<\/li>\n
    33. Ono T, Ohara K, Takenouchi A, Ishikawa A, Kouguchi T,\u00a0Nagano AJ<\/strong>,<\/span>\u00a0Igawa T, Tsudzuki M (2018) Mapping quantitative trait loci for the growth and carcass-related traits of chickens using a restriction-site associated DNA sequence technique, Journal of Poultry Science<\/em><\/strong><\/span>, doi: 10.2141\/jpsa.0180066<\/li>\n
    34. Ono T, Kouguchi T, Ishikawa A,\u00a0Nagano AJ<\/strong>,<\/span>\u00a0Takenouchi A, Igawa T, Tsudzuki M (2018) Quantitative trait loci mapping for the shear force value in breast muscle of F2 chickens, Poultry Science<\/em><\/strong><\/span>,\u00a0doi: 10.3382\/ps\/pey493.<\/li>\n
    35. Kamitani M,\u00a0Nagano AJ<\/strong>,<\/span>\u00a0Honjo MN, Kudoh H (2018) A Survey on Plant Viruses in Natural Brassicaceae Communities Using RNA-Seq, Microbial Ecology<\/em><\/strong><\/span>, doi: 10.1007\/s00248-018-1271-4.<\/li>\n
    36. Hosoya S, Kikychi K, Nagashima H, Onodera J, Sugimoto K, Satoh K, Matsuzaki K, Yasugi M, Tezuka A, Nagano AJ<\/strong>,<\/span>\u00a0Kumagayi A, Ueda K, Kurokawa T (2018) Assessment of genetic diversity in Coho salmon (Oncorhynchus kisutch<\/em>) populations with no family records using ddRAD-seq, BMC Research Note<\/em><\/strong><\/span>, 11:548<\/li>\n
    37. Yasugi M, Tezuka A, Nagano AJ<\/strong><\/span> (2018) Stacksbinder: online tool for visualizing and summarizing Stacks output to aid filtering of SNPs identified using RAD sequencing, Conservation Genetics Resources<\/em><\/strong><\/span>, doi: 10.1007\/s12686-018-1050-z<\/li>\n
    38. Chen YY, Nishii K, Barber S, Hackett C, Kidner CA, Gharbi K, Nagano AJ<\/strong><\/span>, Iwamoto A, Moller M (2018) A first genetic map in the genus Streptocarpus generated with RAD sequencing based SNP markers, South African Journal of Botany<\/em><\/strong><\/span>, 117: 158-168<\/li>\n
    39. Kim S, Mochizuki N, Deguchi A, Nagano AJ<\/strong><\/span>, Suzuki T, Nagatani A (2018) Auxin Contributes to the Intraorgan Regulation of Gene Expression in Response to Shade, Plant physiology<\/em><\/strong><\/span>, 177(2): 847-862<\/li>\n
    40. Awazu A, Tanabe T, Kamitani M, Tezuka A, Nagano AJ<\/strong><\/span> (2018) Broad distribution spectrum from Gaussian to power law appears in stochastic variations in RNA-seq data, Scientific reports<\/em><\/strong><\/span>, 8(1): 8339<\/li>\n
    41. Kobayashi H, Haino Y, Iwasaki T, Tezuka A, Nagano AJ<\/strong><\/span>, Shimada S (2018) ddRAD-seq based phylogeographic study of Sargassum thunbergii (Phaeophyceae, Heterokonta) around Japanese coast, Marine environmental research<\/em><\/strong><\/span>, doi: 10.1016\/j.marenvres.2018.05.021<\/li>\n
    42. Nagano Y, Mimura T, Kotoda N, Matsumoto R, Nagano AJ<\/strong><\/span>, Honjo MN, Kudoh H, Yamamoto M (2018) Phylogenetic relationships of Aurantioideae (Rutaceae) based on RAD-Seq, Tree Genetics & Genomes<\/em><\/strong><\/span>, 14(1): 6<\/li>\n
    43. Kagiya S, Yasugi M, Kudoh H,\u00a0Nagano AJ<\/strong><\/span>,\u00a0Utsumi S\u00a0(2018) Does genomic variation in a foundation species predict arthropod community structure in a riparian forest?, Molecular Ecology<\/em><\/strong><\/span>, 27(5):1284-1295<\/li>\n
    44. Hanada K, Tezuka A, Nozawa M, Suzuki Y, Sugano S, Nagano AJ<\/strong><\/span>, Ito M, Morinaga S-I (2018) Functional divergence of duplicate genes several million years after gene duplication in Arabidopsis, DNA Research<\/em><\/strong><\/span>, dsy005.<\/li>\n
    45. Takeoka M, Higashi T, Honjo MN, Tezuka A, Nagano AJ<\/strong><\/span>, Tanigaki Y, Fukuda H (2018) Estimation of the Circadian Phase by Oscillatory Analysis of the Transcriptome in Plants, Environmental Control in Biology<\/em><\/strong><\/span>, 56(2): 67-72<\/li>\n
    46. Sakaguchi S, Horie K, Kimura T, Nagano AJ<\/strong><\/span>, Isagi Y, Ito M (2018) Phylogeographic testing of alternative histories of single-origin versus parallel evolution of early flowering serpentine populations of Picris hieracioides<\/em> L. (Asteraceae) in Japan, Ecological Research<\/em><\/strong><\/span>, doi: 10.1007\/s11284-017-1536-2.<\/li>\n
    47. Sakaguchi S, Kimura T, Kyan R, Maki M, Nishino T, Ishikawa N,\u00a0Nagano AJ<\/strong><\/span>, Honjo M, Yasugi M, Kudoh H, Li P, Choi H-J, Chernyagina O, Ito M (2018) Phylogeographic analysis of the East Asian goldenrod (Solidago virgaurea<\/em>\u00a0complex, Asteraceae) reveals hidden ecological diversification with recurrent formation of ecotypes,\u00a0Annals of Botany<\/em><\/strong><\/span>, doi: 10.1093\/aob\/mcx182.<\/li>\n
    48. Murata J, Ono E, Yoroizuka S, Toyonaga H, Shiraishi A, Mori S, Tera M, Azuma T, Nagano AJ<\/strong><\/span>, Nakayasu M, Mizutani M, Wakasugi T, Yamamoto MP, Horikawa M (2017) Oxidative rearrangement of (+)-sesamin by CYP92B14 co-generates twin dietary lignans in sesame, Nature Communications<\/em><\/strong><\/span>, 7, 13295<\/li>\n
    49. Ishikawa T, Kashima M,\u00a0Nagano AJ<\/strong><\/span>,\u00a0Ishikawa-Fujiwara T, Kamei Y, Todo T, Mori K (2017) Unfolded Protein Response Transducer IRE1-mediated Signaling Independent of XBP1 mRNA Splicing Is Not Required for Growth and Development of Medaka Fish. eLife<\/em><\/strong><\/span>, 6: e26845<\/li>\n
    50. Goto S, Kajiya-Kanegae H, Ishizuka W, Kitamura K, Ueno S, Hisamoto Y, Kudoh H, Yasugi M, Nagano AJ<\/strong><\/span>, Iwata H\u00a0(2017) Genetic mapping of local adaptation along the altitudinal gradient in Abies\u00a0sachalinensis<\/em>.\u00a0Tree Genetics & Genomes<\/em><\/strong><\/span>, 13: 104.<\/li>\n
    51. Sakaguchi S, Horie K, Ishikawa N, Nagano AJ<\/strong><\/span>,\u00a0 Yasugi M, Kudoh H and Ito M (2017) Simultaneous evaluation of the effects of geographic, environmental and temporal isolation in ecotypic populations of Solidago virgaurea<\/em>.\u00a0New Phytologist<\/em><\/strong><\/span>, doi:10.1111\/nph.14744<\/li>\n
    52. Kamitani\u00a0M,\u00a0Nagano AJ<\/strong><\/span>, Honjo\u00a0MN, Kudoh H (2017) First report of Pelargonium zonate spot virus from wild Brassicaceae plants in Japan.\u00a0Journal of General Plant Pathology<\/em><\/strong><\/span>, 83(5): 329-332<\/li>\n
    53. Kobayashi M, Ohyanagi H, Takanashi H, Asano S, Kudo T, Kanegae H, Nagano AJ<\/strong><\/span>, Tainaka H, Tokunaga T, Sazuka T, Iwata H, Tsutsumi N, Yano K (2017) Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data. DNA Research<\/em><\/strong><\/span>, dsx012<\/li>\n
    54. Iwayama K, Aisaka Y, Kutsuna N, Nagano AJ<\/strong><\/span>\u00a0(2017) FIT: Statistical modeling tool for transcriptome dynamics under fluctuating field conditions.,\u00a0Bioinformatics<\/em><\/strong><\/span>, btx049<\/li>\n
    55. Tanigaki Y, Higashi T, Nagano AJ<\/strong><\/span>, Honjo MN, Fukuda H (2017) Transcriptome Analysis of a Cultivar of Green Perilla (Perilla frutescens) Using Genetic Similarity with Other Plants via Public Databases.,\u00a0Environmental Control in Biology<\/em><\/strong><\/span>, 55(2): 77-83<\/li>\n
    56. Izuno A, Kitayama K, Onoda Y, Tsujii Y, Hatakeyama M, Nagano AJ<\/strong><\/span>, Honjo MN, Shimizu-Inatsugi R, Kudoh K, Shimizu KK, Isagi Y (2017) The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha<\/em> (Myrtaceae).,\u00a0Molecular Ecology<\/em><\/strong><\/span>, 26(6):1515-1532<\/li>\n
    57. Kawakatsu Y, Nakayama H, Kaminoyama K, Igarashi K, Yasugi M, Kudoh H, Nagano AJ<\/strong><\/span>, Yano K, Kuboh N, Kimura S (2017) A GLABRA1<\/em> ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa<\/em> L. supsp. nipposinica<\/em> L. H. Bailey): evidence from QTL analysis.,\u00a0Journal of Plant Research<\/em><\/strong><\/span>, 130(3): 539-550<\/li>\n
    58. Penjor T, Mimura T, Kotoda N, Matsumoto R, Nagano AJ<\/strong><\/span>, Honjo MN, Kudoh H, Yamamoto M, Nagano Y (2016) RAD-Seq analysis of typical and minor Citrus<\/em> accessions, including Bhutanese varieties.,\u00a0Breeding Science<\/em><\/strong><\/span>, 66(5): 797-807<\/li>\n
    59. Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ<\/strong><\/span>, Yasugi M, Honjo M, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y (2016) Genome sequence and analysis of the Japanese morning glory Ipomoea nil<\/em>.,\u00a0Nature Communications<\/em><\/strong><\/span>, 7, 13295<\/li>\n
    60. Kamitani M, Nagano AJ<\/span><\/strong>, Honjo MN, Kudoh H (2016) RNA-Seq reveals virus-virus and virus-plant interactions in nature.,\u00a0FEMS Microbiology Ecology<\/em><\/strong><\/span>, 92(11). pii: fiw176<\/li>\n
    61. Higashi T, Aoki K, Nagano AJ<\/u><\/b>, Honjo MN, Fukuda H (2016) Circadian Oscillation of the Lettuce Transcriptome under Constant Light and Light-Dark Conditions.,\u00a0Frontiers in Plant Science<\/em><\/strong><\/span>, \u00a07: 1114<\/li>\n
    62. Kolar F, Fuxova G, Zaveska E,\u00a0Nagano AJ<\/u><\/b>, Hyklova L, Lucanova M, Kudoh H, Marhold K (2016) Northern glacial refugia and altitudinal niche divergence shape genome-wide differentiation in the emerging plant model\u00a0Arabidopsis arenosa<\/i>.,\u00a0Molecular Ecology<\/em><\/strong><\/span>, 25(16):3929-49<\/li>\n
    63. Tamaki H, Mitsuhashi S, Kudoh H,\u00a0Nagano AJ<\/b><\/u>\u00a0and Yasugi M (2016) Genome wide Molecular Polymorphisms among Maize (Zea mays L.) Inbred Lines Found from Restriction-Associated DNA Tag Sequencing (RAD-Seq) Analysis as a Preliminary Study on \u201cGenomewide Selection\u201d for Breeding by Japanese Public Sectors.,\u00a0Bulletin of NARO Institute of Livestock and Grassland Science<\/em><\/strong><\/span>, 16: 1-9.<\/li>\n
    64. Hagiwara-Komoda Y, Choi SH, Sato M, Atsumi G, Abe J, Fukuda J, Honjo MN, Nagano AJ<\/strong><\/span>, Komoda K, Nakahara KS, Uyeda I, Naito S (2016) Truncated yet functional viral protein produced via RNA polymerase slippage implies underestimated coding capacity of RNA viruses., Scientific Reports<\/em><\/strong><\/span>, 6: 21411.<\/li>\n
    65. Higashi T, \u00a0Tanigaki Y, Takayama K, Nagano AJ<\/strong><\/span>, \u00a0Honjo MN and \u00a0Fukuda H (2016) Detection of diurnal variation of tomato transcriptome through the molecular timetable method in a sunlight-type plant factory., Frontiers in Plant Science<\/em><\/strong><\/span>, 7: 87.<\/li>\n
    66. Nishio H, Buzas DM, Nagano AJ<\/strong><\/span>, Suzuki Y, Sugano S, Ito M, Morinaga S-I and Kudoh H (2016) From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C<\/em> in naturally growing Arabidopsis halleri<\/em>, Genes & Genetic Systems<\/strong><\/span><\/em>,\u00a091(1):15-26<\/li>\n
    67. Kawamura K, Kawanabe T, Shimizu M, Nagano AJ<\/span><\/strong>, Saeki N, Okazaki K, Kaji M, Dennis ES, Osabe K and Fujimoto R (2016) Genetic distance of inbred lines of Chinese cabbage and its relationship to heterosis., Plant Gene<\/em><\/strong><\/span>, 5: 1-7.<\/li>\n
    68. Tanigaki Y, Higashi T, Takayama K, Nagano AJ<\/span><\/strong> and Fukuda H (2015) Transcriptome analysis of plant hormone-related tomato (Solanum lycopersicum<\/em>) genes in a sunlight-type plant factory., PLoS ONE<\/em><\/strong><\/span>, 10(12): e0143412.<\/li>\n
    69. Sakaguchi S, Sugino T, Tsumura Y, Ito M, Crisp MD, Bowman DMJS, Nagano AJ<\/strong><\/span>, Honjo MN, Yasugi M, Kudoh H, Matsuki Y, Suyama Y and Isagi Y (2015) High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla<\/em>) and map transferability to related species., Tree Genetics & Genomes<\/span><\/strong><\/em>,\u00a011: 121.<\/li>\n
    70. Hirao K,\u00a0Nagano AJ<\/span><\/strong>, and Awazu A (2015) Noise-plasticity correlations of gene expression in the multicellular organism\u00a0Arabidopsis thaliana<\/em>.,\u00a0Journal of Theoretical Biology<\/span><\/strong><\/em>, 387:13-22<\/li>\n
    71. Kubota S, Iwasaki T, Hanada K,\u00a0Nagano AJ<\/strong><\/span>, Fujiyama A, Toyoda A, Sugano S, Suzuki Y, Hikosaka K, Ito M and Morinaga S (2015) A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species.,\u00a0PLoS Genetics<\/span><\/strong><\/em>, 14;11(7):e1005361.<\/li>\n
    72. Ushio M, Yamasaki E,\u00a0Takasu H,\u00a0Nagano AJ<\/strong><\/span>,\u00a0Fujinaga S,\u00a0Honjo NM, Ikemoto M, Sakai S and Kudoh H, (2015)\u00a0Microbial Communities on Flower Surfaces Act as Signatures of Pollinator Visitation.,\u00a0Scientific Reports<\/span><\/em><\/strong>,\u00a05: 8695.<\/li>\n
    73. Nagano AJ<\/strong><\/span>,\u00a0Honjo NM, Mihara M, Sato M and Kudoh H, (2015)\u00a0Detection of Plant Viruses in Natural Environments by Using RNA-Seq.,\u00a0Methods in \u00a0Molecular Biology<\/span><\/em><\/strong>,\u00a01236: 89-98.<\/li>\n
    74. Shirakawa M, Ueda H,\u00a0Nagano AJ<\/strong><\/span>,\u00a0Shimada T, Kohchi T and Hara-Nishimura I, (2014)\u00a0FAMA Is an Essential Component for the Differentiation of Two Distinct Cell Types, Myrosin Cells and Guard Cells, in Arabidopsis.,\u00a0Plant Cell<\/span><\/em><\/strong>,\u00a026(10):4039-52.<\/li>\n
    75. Mochizuki K,\u00a0Nagano AJ<\/strong><\/span>, Kudoh H and Kawakita A, (2014) Isolation and Characterization of 11 Microsatellite Markers for\u00a0Glochidion acuminatum\u00a0(Phyllanthaceae)., Applications in Plant Sciences<\/span><\/em><\/strong>, 2 (9):1400045.<\/li>\n
    76. Satoh M, Tokaji Y,\u00a0Nagano AJ<\/span><\/strong>,\u00a0Hara-Nishimura I, Hayashi M, Nishimura M, Ohta H and Masuda S, (2014) Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses.,\u00a0Plant Physiology\u00a0and Biochemistry<\/span><\/em><\/strong>,\u00a080: 90-95.<\/li>\n
    77. Yamada K,\u00a0Nagano AJ<\/strong><\/span>,\u00a0Nishina M, Hara-Nishimura I and Nishimura M, (2013) Identification of Two Novel Endoplasmic Reticulum Body-Specific Integral Membrane Proteins.,\u00a0Plant Physiology<\/span><\/em><\/strong>, 161(1): 108-20.<\/li>\n
    78. Nagano AJ<\/span><\/strong>,\u00a0Sato Y, Mihara M, Antonio BA, Motoyama R, Itoh H, Nagamura Y and Izawa T, (2012)\u00a0Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions.,\u00a0Cell<\/span><\/em><\/strong>, 51(6):1358-69.\n